Home  

---

3. Managing Breeding Data

• 3.1 Managing Breeding Programs
• 3.2 Managing Locations
• 3.3 Managing Accessions
• 3.4 Managing Seed Lots
  • 3.4.1 Add New Seedlot(s)
  • 3.4.2 Seedlot Transactions
  • 3.4.3 Seed Inventory
  • 3.4.4 Find Seedlots For a List of Accessions
  • 3.4.5 Create a seedlot for an Accession or Cross
  • 3.5.6 Add quality data to a seedlot
  • Deleting Seedlots
• 3.5 Managing Populations
• 3.6 Managing Crosses
  • Crossing Experiment
    • 3.6.1 Add New Crossing Experiment
  • Cross
    • 3.6.2 Add New Crosses
      • 3.6.2.1 Add a cross by using the “Add New Cross” dialog
      • 3.6.2.2 Upload New Crosses
    • 3.6.3 Update Crosses by Uploading
  • Cross Wishlist
    • 3.6.4 Create a Cross Wishlist
      • Step 1. Select the accessions to be crossed in your trial
      • Step 2. Select the female plots to be considered in the crosses
      • Step 3. Transfer the cross wishlist to your mobile crossing application
  • Crossing Experiment Detail Page
  • Cross Detail Page
• 3.7 Managing Field Trials
  • Trial Detail Page
  • Adding Trials
    • Prerequisites
    • 3.7.1 Adding a trial by using “Add Trial” form
      • Step 1. Begin the “Design new trial” workflow
      • Step 2. Enter “Trial Information”
      • Step 3. Enter “Design Information”
      • Step 4. Enter “Field Map Information” (Optional)
      • Step 5. Custom Plot Naming (Optional)
      • Step 6. Review Designed Trial
      • Step 7. Add Field Management Factors to your design (Optional).
      • Step 8. Saving new trial in the database.
    • 3.7.2 Adding a trial from an uploaded file
      • Step 1:
        • Minimum File requirements
        • File validation
        • Uploading a trial with Field Management Factors
      • Step 2:
      • Step 3:
      • Step 4:
      • Step 5:
      • Completion screen
    • 3.7.3 Multi-location trials
    • 3.7.4 Viewing Trial HeatMap
      • Tracking plot images on fieldMap
      • Viewing assayed trait heatmap
      • Suppressing Plot Phenotype
    • 3.7.5 Adding additional information in the “Trial Detail” page
      • Uploading Physical Trial Layout
      • Physical Trial Layout File requirements
      • Downloading Field Map Spreadsheet
      • Editing Physical Trial Layout
    • 3.7.6 Downloading the Trial Layout from the “Trial Detail” page
    • 3.7.7 Adding Plant Entries To Your Trial
      • Automatically Generate Plant Entries
      • Upload Plant Entries
    • 3.7.8 Adding Tissue Sample Entries To Your Trial
    • 3.7.9 Uploading GPS Coordinates For Plots
    • 3.7.10 Uploading Additional Files To Trial
    • 3.7.11 Deleting Trial Data
• 3.8 Managing Genotyping Plates
  • 3.8.1 Adding a New Genotyping Plate
  • 3.8.2 Genotyping Plate Detail Page
• 3.9 Using Field Book App
  • A typical workflow
  • 3.9.1 Creating Field Layout Files for the Field Book App
    • 3.9.1.1 Creating “Field Layout Files” by using “Field Book Tools” page.
    • 3.9.1.2 Creating “Field Layout Files” by using “Trial Detail” page.
  • 3.9.2 Creating Trait Files for the Field Book App
    • 3.9.2.1 Creating a Trait List
    • 3.9.2.2 Creating a Trait File
  • 3.9.3 Transferring Files from Your Computer to Android Tablet
    • Files on your computer
    • Files on your Android tablet
  • 3.9.4 Setting up “Field Book App” for data collection
  • 3.9.5 Exporting Files from Field Book App
  • 3.9.6 Uploading Phenotype Files to an SGN database
• 3.10 Managing Phenotypic Data
  • 3.10.1 Uploading Fieldbook Phenotypes
    • Export Field Book Database File
    • Upload Field Book Database File
  • 3.10.2 Uploading Spreadsheet Phenotypes
    • Generating Spreadsheet File
    • Uploading Spreadsheet File
• 3.11 Managing Barcodes
• 3.12 Using the Label Designer
• 3.13 Managing Downloads
• 3.14 Managing ODK Data Collection
  • 3.14.1 ONA Crossing Information
    • Managing ONA Crossing Information
    • Reviewing Plant Status
    • Graphical Summary For Performed Crosses
    • Summary Information For Performed Crosses
• 3.15 Managing Tissue Samples
  • 3.15.1 Tissue samples from field trials
  • 3.15.2 Genotyping Plate Tissue Samples (96 or 384 well plates)
• 3.16 Managing Observation Variables with Traits, Methods, and Scales
  • 3.16.1 Managing Observation Variables
• 3.17 Managing Image Data For Phenotyping
  • 3.17.1 Image-Phenotyping Dashboard
  • 3.17.2 Image Input
  • 3.17.3 Standard Process
  • 3.18.4 Ground Control Points
• 3.18 Managing Genotypic Data in VCF
  • 3.18.1 Uploading Genotyping Data in VCF
  • 3.18.2 Searching and Downloading Genotyping Data in VCF Against Phenotyping Data
  • 3.18.3 Searching Genotyping Protocols
  • 3.18.4 Genotyping Protocol Detail Page and Deleting a Genotyping Protocol
• 3.19 Managing Spectral Data
  • 3.19.1 Initiate upload of spectral data file
  • 3.19.2 Evaluate and remove spectral outliers
  • 3.19.3 Plot spectra with outliers highlighted
  • 3.19.4 Aggregate spectra by observation units
  • 3.19.5 References
• 3.21 Managing Sequence Metadata
  • 3.21.1 What is Sequence Metadata?
  • 3.21.2 Loading Sequence Metadata
  • 3.21.2 Searching Sequence Metadata
    • Basic Search
    • Advanced Search
  • 3.21.3 Marker Integration
  • 3.21.4 Sequence Metadata API

Breeding data can be submitted and managed by using “Manage” section. In order to submit and manage breeding data on the database, you need to login and your account must have “submitter” status.